Bacteriophage

Coevolution

Bacteria

Escherichia coli

Resistance (ecology)

Evolutionary biology

Biology

Microbiology

Gene

Ecology

Phage therapy

Bacterial virus

Computational biology

Experimental evolution

Genetics

Antibiotic resistance

Proceedings of the National Academy of Sciences

Significance The evolution of antibiotic-resistant bacteria threatens to claim over 10 million lives annually by 2050. This crisis has renewed interest in phage therapy, the use of bacterial viruses to treat infections. A major barrier to successful phage therapy is that bacteria readily evolve phage resistance. One idea proposed to combat resistance is “training” phages by using their natural capacity to evolve to counter resistance. Here, we show that training phages by coevolving them with their hosts for 1 mo repeatably enhances their capacity for suppressing bacterial growth and delays the emergence of resistance. Enhanced suppression was caused by several mechanisms, suggesting that the coevolutionary training protocol produces a robust therapeutic that employs complementary modes of action.

Coevolutionary phage training leads to greater bacterial suppression and delays the evolution of phage resistance