Complete Genome Sequence of Salmonella enterica subsp. diarizonae Serovar 61:k:1,5,(7) Strain 14-SA00836-0, Isolated from Human Urine.

Published on Sep 3, 2020
· DOI :10.1128/MRA.00683-20
Laura Uelze4
Estimated H-index: 4
(BfR: Federal Institute for Risk Assessment),
Maria Borowiak12
Estimated H-index: 12
(BfR: Federal Institute for Risk Assessment)
+ 3 AuthorsBurkhard Malorny43
Estimated H-index: 43
(BfR: Federal Institute for Risk Assessment)
Sources
Abstract
ABSTRACT Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7) is commonly associated with sheep. Occasionally, the serovar has been found to also infect humans. Here, we report the complete genome sequence of strain 14-SA00836-0, isolated from human urine. To our knowledge, this is the first reported complete genome sequence of this serovar isolated from a human clinical sample.
References14
Newest
#1Laura UelzeH-Index: 4
#2Maria BorowiakH-Index: 12
Last. Burkhard MalornyH-Index: 43
view all 7 authors...
Background The Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7) (SASd) has been found to be host-adapted to sheep, with a high prevalence in sheep herds worldwide. Infections are usually sub-clinical, however the serovar has the potential to cause diarrhea, abortions and chronic proliferative rhinitis. Although occurrence and significance of SASd infections in sheep have been extensively studied, the genetic mechanism underlying this unusual host-adaptation have remained unknown, due t...
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#1Inés Rubira (University of Zaragoza)H-Index: 2
#2L. Figueras (University of Zaragoza)H-Index: 6
Last. Delia Lacasta (University of Zaragoza)H-Index: 10
view all 7 authors...
Abstract Chronic proliferative rhinitis (CPR) is a slow and progressive upper respiratory tract disease of sheep with a poor prognosis for affected animals. It causes a proliferative inflammation of the ventral nasal turbinates with uni or bilateral affection that may totally obstruct the nasal cavity. Salmonella enterica subspecies diarizonae serovar 61:k:1,5,(7) has been associated with the disease. This microorganism, host-adapted of tonsils and nasal cavity of sheep, has been isolated in pur...
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#1Joaquín Giner-Lamia (UPM: Technical University of Madrid)H-Index: 10
#2Pablo Vinuesa (UNAM: National Autonomous University of Mexico)H-Index: 31
Last. Francisco García-del Portillo (CSIC: Spanish National Research Council)H-Index: 41
view all 9 authors...
Background Salmonella enterica subsp. diarizonae (IIIb) is frequently isolated from the environment, cold-blooded reptiles, sheep and humans; however only a few studies describe the isolation of this subspecies from invasive human infections. The factors contributing to this unusual behavior are currently unknown.
Source
#1Ulrich Methner (Friedrich Loeffler Institute)H-Index: 22
#2Udo MoogH-Index: 4
Background The occurrence of Salmonella enterica subspecies diarizonae serovar 61: k: 1, 5, (7) (SASd) and other Salmonella organisms in sheep in the German federal state of Thuringia was examined for the first time. Pooled faecal samples from 90 flocks located in this state were monitored.
Source
#1Shifu Chen (CAS: Chinese Academy of Sciences)H-Index: 13
#2Yanqing ZhouH-Index: 5
Last. Jia Gu (CAS: Chinese Academy of Sciences)H-Index: 13
view all 4 authors...
Motivation: Quality control and preprocessing of FASTQ files are essential to providing clean data for downstream analysis. Traditionally, a different tool is used for each operation, such as quality control, adapter trimming and quality filtering. These tools are often insufficiently fast as most are developed using high-level programming languages (e.g. Python and Java) and provide limited multi-threading support. Reading and loading data multiple times also renders preprocessing slow and I/O ...
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#1Philipp Schnydrig (University of Bern)H-Index: 2
#2Gudrun Overesch (University of Bern)H-Index: 14
Last. Sabrina Rodriguez-Campos (University of Bern)H-Index: 8
view all 5 authors...
Abstract Salmonella enterica subsp. diarizonae (IIIb) 61:(k):1,5,(7) is commonly found in sheep and is considered to be host-adapted to this species, although it can lead to abortion, stillbirth, diarrhea, chronic proliferative rhinitis and orchitis/epididymitis. Infections with S. IIIb 61:(k):1,5,(7) in humans were also reported, although its zoonotic potential is generally considered low ( Soren et al., 2015 ). This study includes four strains from ovine abortions and one strain from abortion ...
Source
#1Nadine Stokar-Regenscheit (University of Bern)H-Index: 7
#2Gudrun Overesch (University of Bern)H-Index: 14
Last. Corinne Gurtner (University of Bern)H-Index: 9
view all 5 authors...
Abstract Salmonella (S.) enterica subspecies diarizonae (IIIb) serovar 61:(k):1,5,(7) ( S . IIIb 61:(k):1,5,(7)) is considered to be host adapted to sheep and is found regularly in feces of healthy carriers and of sheep with salmonellosis. A few cases of chronic proliferative rhinitis (CPR) in sheep have been described as a new disease in association with S . IIIb 61:k:1,5,(7) in the USA, in Spain and now for the first time in Switzerland. Three animals of a flock of Texel sheep suffering from c...
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#1Ryan R. Wick (University of Melbourne)H-Index: 23
#2Louise M. Judd (University of Melbourne)H-Index: 36
Last. Kathryn E. Holt (University of Melbourne)H-Index: 68
view all 4 authors...
The Illumina DNA sequencing platform generates accurate but short reads, which can be used to produce accurate but fragmented genome assemblies. Pacific Biosciences and Oxford Nanopore Technologies DNA sequencing platforms generate long reads that can produce complete genome assemblies, but the sequencing is more expensive and error-prone. There is significant interest in combining data from these complementary sequencing technologies to generate more accurate “hybrid” assemblies. However, few t...
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Abstract The aim of the present study was to investigate the clinical, pathological and immunological changes in lambs infected experimentally with Salmonella enterica subsp. diarizonae serotype 61:k:1,5,(7) (SED) that causes chronic proliferative rhinitis (CPR) in sheep. Eleven four-month-old lambs were infected with 3.2 × 10 8 UFC of SED by nasal route and four lambs with the same age were kept as placebo group. Clinical explorations were carried out monthly and vaginal, nasal swaps and fecal ...
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#1Tatiana Tatusova (NIH: National Institutes of Health)H-Index: 42
#2Michael DiCuccio (NIH: National Institutes of Health)H-Index: 18
Last. James Ostell (NIH: National Institutes of Health)H-Index: 23
view all 10 authors...
Recent technological advances have opened unprecedented opportunities for large-scale sequencing and analysis of populations of pathogenic species in disease outbreaks, as well as for large-scale diversity studies aimed at expanding our knowledge across the whole domain of prokaryotes. To meet the challenge of timely interpretation of structure, function and meaning of this vast genetic information, a comprehensive approach to automatic genome annotation is critically needed. In collaboration wi...
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Cited By3
Newest
#1Ji-Yeon Hyeon (UConn: University of Connecticut)H-Index: 9
Abstract null null Salmonella enterica subspecies diarizonae serovar 61: (k):1, 5, (7) (sheep associated S. diarizonae, SASd) is the most common Salmonella serotype identified in sheep flocks. Despite the involvement with animal and human infections, there is limited information regarding virulence profiles of SASds and their antibiotic resistance gene complement, particularly for those circulating in the U.S. In this study, we genetically characterized three SASds, 20-265, 20-269, and 20-312, i...
Source
Objective: To analyze the molecular epidemiology, resistance and pathogenicity of Salmonella enterica subsp. diarizonae isolated from children. Methods: Whole genome sequencing were carried out, the molecular serotypes, sequence types, resistance genes and virulence genes of S. enterica subsp. diarizonae isolates were analyzed. Antimicrobial susceptibility test was determined by commercialized micro-dilution method. Results: A total of 3 isolates of S. enterica subsp. diarizonae were isolated du...
Source
#1Laura Uelze (BfR: Federal Institute for Risk Assessment)H-Index: 4
#2Maria Borowiak (BfR: Federal Institute for Risk Assessment)H-Index: 12
Last. Burkhard Malorny (BfR: Federal Institute for Risk Assessment)H-Index: 43
view all 9 authors...
Source
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