Carbonatitic magmatism plays a significant role in outgassing carbon from mantle and the formation of rare earth element (REE), rare metal (e.g., Nb and Th) and other types of deposits. The mechanism of REE mineralization associated with carbonatite have been widely studied. However, it is hard to understand U-Nb mineralization without Th enrichment associated with carbonatite. Here we report a carbonatite-hosted U-Nb deposit in Huayangchuan, located in the north Qinling Orogenic Belt. Field observation, mineralogy and geochemical analysis on a suite of drillhole samples were conducted to decipher the mineralization mechanism and its relationship with carbonatite. Huayangchuan carbonatite samples mainly consist of calcite and augite with small volume of accessory minerals (e.g., allanite, fluorapatite, barite and celestite). Betafite [(Ca,U) 2 (Ti,Nb,Ta) 2 O 6 (OH)] is the major ore-bearing mineral in Huayangchuan deposit. The carbonatite shows high CaO, low MgO and alkali contents, which should be products to be differentiated from primary carbonatite (high MgO and alkali contents). The immiscibility and crystallization processes could explain the high CaO/(CaO + MgO + FeO) ratios and the enrichment of LILE. Numerical modeling also indicates positive δ 18 O SMOW (7.29 to 15.53‰) and negative δ 13 C PDB (−5.26 to −10.08‰) shifts are induced by reduced sediments assimilation from source consistent with there being enriched Sr-Nd and low Mg isotopic compositions. LA-ICP-MS zircon U-Pb dating of Huayangchuan carbonatite yielded Triassic ages of 229 ± 3 Ma, which corresponds to the post-collision stage of Qinling Orogen during the middle-late Triassic. We then proposed that the recycling of subducted sediments and later re-melting of those materials in shallow mantle generated the Huayangchuan carbonatite and subsequently formed the Huayangchuan deposit. Fluorine concentration decrease, caused by fluorapatite crystallization, ultimately resulted in betafite mineralization.