Yersinia pestis

Salmonella

Bacteria

Evolutionary biology

Biology

Phylogenetics

Gene

Yersinia

Computational biology

Genetics

Virulence

Genome Research

EnteroBase is an integrated software environment that supports the identification of global population structures within several bacterial genera that include pathogens. Here, we provide an overview of how EnteroBase works, what it can do, and its future prospects. EnteroBase has currently assembled more than 300,000 genomes from Illumina short reads from

The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity