Improved metagenomic analysis with Kraken 2

Volume: 20, Issue: 1
Published: Nov 28, 2019
Abstract
Although Kraken's k-mer-based approach provides a fast taxonomic classification of metagenomic sequence data, its large memory requirements can be limiting for some applications. Kraken 2 improves upon Kraken 1 by reducing memory usage by 85%, allowing greater amounts of reference genomic data to be used, while maintaining high accuracy and increasing speed fivefold. Kraken 2 also introduces a translated search mode, providing increased...
Paper Details
Title
Improved metagenomic analysis with Kraken 2
Published Date
Nov 28, 2019
Volume
20
Issue
1
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