Cytoscape Automation: empowering workflow-based network analysis
Abstract
Cytoscape is one of the most successful network biology analysis and visualization tools, but because of its interactive nature, its role in creating reproducible, scalable, and novel workflows has been limited. We describe Cytoscape Automation (CA), which marries Cytoscape to highly productive workflow systems, for example, Python/R in Jupyter/RStudio. We expose over 270 Cytoscape core functions and 34 Cytoscape apps as REST-callable functions...
Paper Details
Title
Cytoscape Automation: empowering workflow-based network analysis
Published Date
Sep 2, 2019
Journal
Volume
20
Issue
1
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