Original paper
IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses
Abstract
Existing workflows for the analysis of multi-omic microbiome datasets are lab-specific and often result in sub-optimal data usage. Here we present IMP, a reproducible and modular pipeline for the integrated and reference-independent analysis of coupled metagenomic and metatranscriptomic data. IMP incorporates robust read preprocessing, iterative co-assembly, analyses of microbial community structure and function, automated binning, as well as...
Paper Details
Title
IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses
Published Date
Dec 1, 2016
Journal
Volume
17
Issue
1