Genomics data
Papers
714
Papers 711
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#1Emmanuel Haruna (Kaduna State University)H-Index: 3
#2Noraziah Mohamad Zin (UKM: National University of Malaysia)H-Index: 14
Last. Jonathan M. Adams (Cranfield University)H-Index: 44
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Abstract Here we report the draft genome sequence of an endophytic Paenibacillus tyrfis strain isolated from the Universiti Kebangsaan Malaysia reserve forest, Malaysia. The genome size was approximately 8.04 Mb, and the assembly consisted of 107 scaffolds with 168 contigs, and had a G + C content of 53%. Phylogenetic analysis of strain SUK123 using the 16S rRNA gene revealed that it belonged to the family Paenibacillaceae with the highest similarity to Paenibacillus elgii SD T (99%). Whole geno...
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#1Apostolos KalivasH-Index: 15
#2Ioannis GanopoulosH-Index: 23
Last. Panagiotis MadesisH-Index: 26
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Abstract Nutrients in the form of fertilizers and/or other additives such as amino acids, dramatically influence plant development and growth, plant nutrient composition and the level of soil pollution. Moreover, the treatment of soil microbiota is emerging as a new strategy in plant breeding to achieve desirable traits. Thus, integrated study of fertilizer application and soil microbiota might lead to a better understanding of soil-plant interactions and inform the design of novel ways to ferti...
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#1M. Gu (NUS: National University of Singapore)
#2V.Y. Poon (NUS: National University of Singapore)
Abstract MicroRNAs (miRNAs), short non-coding RNAs that repress gene expression [1] , have recently emerged as important regulators of synaptic transmission and plasticity in the central nervous system [2] . This suggests an important role of this gene silencing mechanism in brain function both in health and disease states [3] . We previously reported a novel function of disease-associated miR-27b in promoting presynaptic assembly [4] . To further understand the role of this miRNA in the brain, ...
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#1Balaji Veeraraghavan (Christian Medical College & Hospital)H-Index: 22
#2Naveen Kumar Devanga Ragupathi (Christian Medical College & Hospital)H-Index: 10
Last. Charles Livingston (Christian Medical College & Hospital)H-Index: 1
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Abstract Group B streptococcus is known as a leading cause of neonatal infections in developing countries. The present study describes the whole genome shotgun sequences of four Group B Streptococcus (GBS) isolates. Molecular data on clonality is lacking for GBS in India. The present genome report will add important information on the scarce genome data of GBS and will help in deriving comparative genome studies of GBS isolates at global level. This Whole Genome Shotgun project has been deposite...
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#1Rupa Iyer (UH: University of Houston)H-Index: 8
#2Ashish Damania (BCM: Baylor College of Medicine)H-Index: 9
Last. Brian Iken (UH: University of Houston)H-Index: 6
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Abstract The genus Microbacterium is composed of high GC content, Gram-positive bacteria of the phylum Acintobacteria known for their antibiotic production. Microbacterium species commonly colonize agricultural rhizospheres and more infrequently have been found to colonize and infect human tissues as well. Here we report the 3,696,310 bp draft genome (chromosome and plasmids) sequence assembled at the scaffold level from 232 contigs of Microbacterium sp. strain AISO3, isolated from polluted San ...
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#1Gitanjali Tandon (Indian Agricultural Statistics Research Institute)H-Index: 3
#2Surya Prakash SinghH-Index: 62
Last. Dinesh Kumar (Indian Agricultural Statistics Research Institute)H-Index: 9
view all 7 authors...
Abstract Tomato ( Solanum lycopersicum ) is one of the major vegetable plant and a model system for fruit development. Its global importance is due to its lycopene pigment which has anti-oxidative and anti-cancerous properties. Though > 1.5 M biotic stress associated ESTs of tomato are available but cumulative analysis to predict genes is warranted. Availability of whole genome de novo assembly can advantageously be used to map them over different chromosome. Further, available 0.14 M catalogued...
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#1Rupa Iyer (UH: University of Houston)H-Index: 8
#2Brian Iken (UH: University of Houston)H-Index: 6
Last. Ashish Damania (BCM: Baylor College of Medicine)H-Index: 9
view all 3 authors...
Abstract Klebsiella aerogenes is a Gram-negative bacterium of the family Enterobacteriaceae which is widely distributed in water, air and soil. It also forms part of the normal microbiota found in human and animal gastrointestinal tracts. Here we report the draft genome sequence (chromosome and 1 plasmid) of K. aerogenes strain PX01 compiled at the scaffold level from 97 contigs totaling 5,262,952 bp. K. aerogenes PX01 was isolated from sediment along the northern face of Burnet Bay west of Bayt...
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#1Safoora Amini (UKM: National University of Malaysia)H-Index: 2
#2Halimah AliasH-Index: 4
Last. Kiew Lian Wan (UKM: National University of Malaysia)H-Index: 9
view all 7 authors...
Abstract Rafflesia cantleyi , known as one of the world's largest flowers, is a specialised holoparasite due to dramatic morphological modifications. It possesses highly reduced vegetative structure and only appears as a flower for sexual reproduction. Moreover, it has an unusual life cycle in that its floral bud development takes up to nine months. In order to fully understand the highly modified floral organ structure and long life cycle of R. cantleyi , we used Illumina sequencing technology ...
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#1Lushun Yuan (WHU: Wuhan University)H-Index: 10
#2Liang Chen (WHU: Wuhan University)H-Index: 10
Last. Yu Xiao (WHU: Wuhan University)H-Index: 22
view all 7 authors...
Abstract Human clear cell renal cell carcinoma (ccRCC) is one of the most common types of malignant adult kidney tumors. We constructed a weighted gene co-expression network to identify gene modules associated with clinical features of ccRCC ( n = 97). Six hub genes ( CCNB2 , CDC20 , CEP55 , KIF20A , TOP2A and UBE2C ) were identified in both co-expression and protein-protein interaction (PPI) networks, which were highly correlated with pathologic stage. The significance of expression of the hub ...
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#1Yong Huang (HAUST: Henan University of Science and Technology)H-Index: 13
#2Jian Li Xiong (HAUST: Henan University of Science and Technology)H-Index: 4
Last. Xi Hong Sun (HAUST: Henan University of Science and Technology)H-Index: 6
view all 4 authors...
Abstract The Chinese giant salamander (Andrias davidianus) is an economically important animal on academic value. However, the genomic information of this species has been less studied. In our study, the transcripts of A. davidianus were obtained by RNA-seq to conduct a transcriptomic analysis. In total 132,912 unigenes were generated with an average length of 690 bp and N50 of 1263 bp by de novo assembly using Trinity software. Using a sequence similarity search against the nine public database...
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