Arnaud Marcoux
University of Paris
Deep learningStatistical classificationSoftware engineeringSpatial normalizationMachine learningBiophysicsRadiologyGeologyData processingNeuropsychologyPipeline (computing)Artificial intelligenceData structureData managementRandom forestNeuroscienceCognitionPipeline transportSet (abstract data type)Pattern recognitionChemistryProjection (set theory)Structure (mathematical logic)Medical physicsClinical neurosciencePositron emission tomographySurface (mathematics)Degenerative diseaseSoftwareDiseasePrimary progressive aphasiaHippocampusTarget audienceDisease classificationCortical thinningDisease progressionOpen source softwareNuclear medicineCortical surfacePatient data18f fdg petSmoothingComputer sciencePipeline (software)Volume (compression)Training setFeature extractionVoxelNeuroimagingMedicineFeature (computer vision)
10Publications
3H-index
2,769Citations
Publications 11
Newest
We present Clinica (www.clinica.run), an open-source software platform designed to make clinical neuroscience studies easier and more reproducible. Clinica aims for researchers to i) spend less time on data management and processing, ii) perform reproducible evaluations of their methods, and iii) easily share data and results within their institution and with external collaborators. The core of Clinica is a set of automatic pipelines for processing and analysis of multimodal neuroimaging data (c...
3 CitationsSource
We present Clinica (www.clinica.run), an open-source software platform designed to make clinical neuroscience studies easier and more reproducible. Clinica aims for researchers to i) spend less time on data management and processing, ii) perform reproducible evaluations of their methods, and iii) easily share data and results within their institution and with external collaborators. The core of Clinica is a set of automatic pipelines for processing and analysis of multimodal neuroimaging data (c...
1 Citations
#1Igor KovalH-Index: 5
#2Alexandre BôneH-Index: 5
Last. Stanley DurrlemanH-Index: 26
view all 14 authors...
Simulating the effects of Alzheimer's disease on the brain is essential to better understand, predict and control how the disease progresses in patients. Our limited understanding of how disease mechanisms lead to visible changes in brain images and clinical examination hampers the development of biophysical simulations. Instead, we propose a statistical learning approach, where the repeated observations of several patients over time are used to synthesise personalised digital brain models. They...
3 CitationsSource
#1Alexandre RoutierH-Index: 11
#2Arnaud MarcouxH-Index: 3
Last. Olivier ColliotH-Index: 41
view all 12 authors...
#1Igor KovalH-Index: 5
#2Arnaud MarcouxH-Index: 3
Last. Stanley DurrlemanH-Index: 26
view all 6 authors...
#1Alexandre RoutierH-Index: 11
#2Arnaud MarcouxH-Index: 3
Last. Olivier ColliotH-Index: 41
view all 14 authors...
3,126 CitationsSource
#1Arnaud MarcouxH-Index: 3
#2Ninon BurgosH-Index: 15
Last. Olivier ColliotH-Index: 41
view all 11 authors...
We present a fully automatic pipeline for the analysis of PET data on the cortical surface. Our pipeline combines tools from FreeSurfer and PETPVC, and consists of i) co-registration of PET and T1-w MRI (T1) images, ii) intensity normalization, iii) partial volume correction, iv) robust projection of the PET signal onto the subject’s cortical surface, v) spatial normalization to a template, and vi) atlas statistics. We evaluated the performance of the proposed workflow by performing group compar...
8 CitationsSource
#2Ninon BurgosH-Index: 15
Last. Olivier ColliotH-Index: 41
view all 16 authors...
A large number of papers have introduced novel machine learning and feature extraction methods for automatic classification of Alzheimer's disease (AD). However, while the vast majority of these works use the public dataset ADNI for evaluation, they are difficult to reproduce because different key components of the validation are often not readily available. These components include selected participants and input data, image preprocessing and cross-validation procedures. The performance of the ...
61 CitationsSource
#1Arnaud MarcouxH-Index: 3
#2Ninon BurgosH-Index: 15
Last. Olivier ColliotH-Index: 41
view all 10 authors...