OxDNA.org: a public webserver for coarse-grained simulations of DNA and RNA nanostructures

Volume: 49, Issue: W1, Pages: W491 - W498
Published: May 1, 2021
Abstract
OxDNA and oxRNA are popular coarse-grained models used by the DNA/RNA nanotechnology community to prototype, analyze and rationalize designed DNA and RNA nanostructures. Here, we present oxDNA.org, a graphical web interface for running, visualizing and analyzing oxDNA and oxRNA molecular dynamics simulations on a GPU-enabled high performance computing server. OxDNA.org automatically generates simulation files, including a multi-step relaxation...
Paper Details
Title
OxDNA.org: a public webserver for coarse-grained simulations of DNA and RNA nanostructures
Published Date
May 1, 2021
Volume
49
Issue
W1
Pages
W491 - W498
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