GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes
Abstract
GetOrganelle is a state-of-the-art toolkit to accurately assemble organelle genomes from whole genome sequencing data. It recruits organelle-associated reads using a modified “baiting and iterative mapping” approach, conducts de novo assembly, filters and disentangles the assembly graph, and produces all possible configurations of circular organelle genomes. For 50 published plant datasets, we are able to reassemble the circular plastomes from...
Paper Details
Title
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes
Published Date
Sep 10, 2020
Journal
Volume
21
Issue
1
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