RaGOO: fast and accurate reference-guided scaffolding of draft genomes

Volume: 20, Issue: 1, Pages: 224 - 224
Published: Oct 28, 2019
Abstract
We present RaGOO, a reference-guided contig ordering and orienting tool that leverages the speed and sensitivity of Minimap2 to accurately achieve chromosome-scale assemblies in minutes. After the pseudomolecules are constructed, RaGOO identifies structural variants, including those spanning sequencing gaps. We show that RaGOO accurately orders and orients 3 de novo tomato genome assemblies, including the widely used M82 reference cultivar. We...
Paper Details
Title
RaGOO: fast and accurate reference-guided scaffolding of draft genomes
Published Date
Oct 28, 2019
Volume
20
Issue
1
Pages
224 - 224
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