Modular design

Operating system

Archaeology

Workflow

Set (abstract data type)

Programming language

Barcode

Computer science

Database

Suite

History

File format

Bioinformatics

We introduce the Barcode-UMI-Set format (BUS) for representing pseudoalignments of reads from single-cell RNA-seq experiments. The format can be used with all single-cell RNA-seq technologies, and we show that BUS files can be efficiently generated. BUStools is a suite of tools for working with BUS files and facilitates rapid quantification and analysis of single-cell RNA-seq data. The BUS format therefore makes possible the development of modular, technology-specific and robust workflows for single-cell RNA-seq analysis.http://BUStools.github.io/ and http://pachterlab.github.io/kallisto/singlecell.html.Supplementary data are available at Bioinformatics online.

The barcode, UMI, set format and BUStools